HsaEX0041091 @ hg19
Exon Skipping
Gene
ENSG00000141140 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:26234]
Coordinates
chr17:34870289-34871833:-
Coord C1 exon
chr17:34871701-34871833
Coord A exon
chr17:34870956-34871025
Coord C2 exon
chr17:34870289-34870391
Length
70 bp
Sequences
Splice sites
3' ss Seq
AACATAGGTGTGATCTGTAGGGA
3' ss Score
3.73
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ACATGGACGTCTCGCTGCCTAATGAAGTTCTATGCTGTGGTGGCCACCTCACCTGCATCTTGGGAGAGCCACAAGATTGCAGAGAGGATAGAACAGAGGATCCTGAACTCCAACCCTGTCATGGAAGCTTTTG
Seq A exon
GGAATGCGTGTACACTGAGGAATAACAACAGCAGTCGCTTTGGGAAGTTCATCCAGCTCCAGCTGAACAG
Seq C2 exon
GGCTCAGCAAATGACTGGAGCCGCAGTCCAGACCTACCTCCTAGAGAAAACTCGAGTGGCCTGCCAGGCTTCCAGTGAGAGGAACTTCCACATCTTCTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141140_MULTIEX2-6/13=5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(29.3=100),PF131481=DUF3987=PD(54.4=82.2),PF118703=DUF3390=PD(66.7=93.3)
A:
PF0006316=Myosin_head=FE(8.4=100),PF118703=DUF3390=PD(21.2=70.8)
C2:
PF0006316=Myosin_head=FE(19.4=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTCTATGCTGTGGTGGCC
R:
GCAGGCCACTCGAGTTTTCTC
Band lengths:
173-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)