GgaEX6017718 @ galGal4
Exon Skipping
Gene
ENSGALG00000005374 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:8138134-8138758:-
Coord C1 exon
chr19:8138626-8138758
Coord A exon
chr19:8138341-8138410
Coord C2 exon
chr19:8138134-8138236
Length
70 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTGGTAATTTCACAGGCA
3' ss Score
7.6
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ACCTGGACATCTCGCTGCCTTATGAAATTTTATGCTTCTGTTGCTGCTTCTGCTACTTCCCCAAAAGGCAATGAAGCTGTGGAACGGATAGAGAAGAGAGTGTTGGATTCCAACCCTATCATGGAAGCATTTG
Seq A exon
GCAATGCATGTACTCTGAGGAACAACAACAGTAGCCGTTTTGGGAAATATATTCAGCTTCACTTGGACAG
Seq C2 exon
GTTCCACCATCTGAGTAGTGCTTCCATTCAGACTTTCCTTTTGGAGAAGACAAGAGTTGCCTATCAGGCCCCCAATGAAAGAAACTTTCATATATTTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.3=100)
A:
PF0006316=Myosin_head=FE(3.3=100)
C2:
PF0006316=Myosin_head=FE(4.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGCTTCTGCTACTTCCC
R:
GTTTCTTTCATTGGGGGCCTGA
Band lengths:
178-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]