HsaEX0041091 @ hg38
Exon Skipping
Gene
ENSG00000278259 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr17:36514446-36515990:-
Coord C1 exon
chr17:36515858-36515990
Coord A exon
chr17:36515113-36515135
Coord C2 exon
chr17:36514446-36514548
Length
23 bp
Sequences
Splice sites
3' ss Seq
ACAGCAGTCGCTTTGGGAAGTTC
3' ss Score
-2.78
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ACATGGACGTCTCGCTGCCTAATGAAGTTCTATGCTGTGGTGGCCACCTCACCTGCATCTTGGGAGAGCCACAAGATTGCAGAGAGGATAGAACAGAGGATCCTGAACTCCAACCCTGTCATGGAAGCTTTTG
Seq A exon
TTCATCCAGCTCCAGCTGAACAG
Seq C2 exon
GGCTCAGCAAATGACTGGAGCCGCAGTCCAGACCTACCTCCTAGAGAAAACTCGAGTGGCCTGCCAGGCTTCCAGTGAGAGGAACTTCCACATCTTCTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000278259-'35-42,'35-41,36-42
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.125 C2=0.091
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.8=100)
A:
PF0006316=Myosin_head=FE(4.4=100)
C2:
PF0006316=Myosin_head=FE(12.8=100)
Main Inclusion Isoform:
ENST00000621550fB4494
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAACCCTGTCATGGAAGC
R:
TTCCTCTCACTGGAAGCCTGG
Band lengths:
110-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development