HsaINT0108463 @ hg38
Intron Retention
Gene
ENSG00000278259 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr17:36514446-36515182:-
Coord C1 exon
chr17:36515113-36515182
Coord A exon
chr17:36514549-36515112
Coord C2 exon
chr17:36514446-36514548
Length
564 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
CTGGCCTGTGTGTGTCCCAGGGC
3' ss Score
9.45
Exon sequences
Seq C1 exon
GGAATGCGTGTACACTGAGGAATAACAACAGCAGTCGCTTTGGGAAGTTCATCCAGCTCCAGCTGAACAG
Seq A exon
GTAATAGCTGCTGTTGCCCTGGCTAGTGGGAGGATGGGACTGGGGAGGTTGAAAGTGGCTGGGGCAGTATCTGGCCTGGGCCACCCCTATGGGCAAAAACCCTGCTCCTCCTGGTGCATGCCCTTTACCTCAGGTGTGAGCTCTGAGGGTGATCTTTGCACCTGGAGAACTATAGCTCCTCTCCCCTTGGGGAACCCTGGGGCAGTGCGCTTATTCAGGCCTGGGTTCCTCCTGGCTTTTACTCTTGCTCAGGGACTTCAAGCTAAATTGCCACCTCTTTGGACCATATCCCTGAGCTTGAGGCTGAGACTTCGACTCCTGTCTTGGGGTAGAGCAAAGTGATGTGCAGAGGCCTTGGCCCTGCCCACCTGAGCTAGATGCAGGGGAATATTCCAGGACACCCAAGGACATTCTGAGTGGTCCCCACCCCTCAGTGCCCATTGGCTAAGTGGAAGAGCTTGGCGGGGAGTTGCCAGGTAGCAGGCAATCTGGCACACCCAGATTGCCAGACATGGCTATGGAATGAATGGGCAACTAACGGGCTCTGGCCTGTGTGTGTCCCAG
Seq C2 exon
GGCTCAGCAAATGACTGGAGCCGCAGTCCAGACCTACCTCCTAGAGAAAACTCGAGTGGCCTGCCAGGCTTCCAGTGAGAGGAACTTCCACATCTTCTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000278259:ENST00000610930:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(13.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development