MmuINT0104104 @ mm10
Intron Retention
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84893325-84894652:+
Coord C1 exon
chr11:84893325-84893394
Coord A exon
chr11:84893395-84894549
Coord C2 exon
chr11:84894550-84894652
Length
1155 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GCTTCTGTGTGTTGTGCCAGAGC
3' ss Score
6.45
Exon sequences
Seq C1 exon
GGAACGCATGCACACTGAGGAACAGCAACAGCAGCCGCTTCGGGAAGTTCATTCAGCTCCAACTCAACAG
Seq A exon
GTAAGGGCGACCGCCGCTCAGCAACCGGGGCAGCAGAGGCGGGGGCAGCAACCGGGGCAGCAGAGGTGGGCTCAGCAAACGGGGCAGCAGAGGCAGGGGCAGCAACCGGGGCAGCAGAGGCAGGGGCAGCAACCGGGGCAGCAGAGACAGGGGCAGCAAACAGGGGCAGCAGAGGCAGGGGCAGCAACCGGGGCAGCAGAGGCAGGGGCAGCAACCGGGGCAGCAGAGGCAGGGGCAGCAGAGGCAGGGGCAGCAACCGGGGCAGCAGAGGCAGGGGCAGCAACCGGGGCAGCAGAGGCAGGGGCAGCAACCGGGGCAGCAGAGGCAGGGGCAGCAGAGGCAGGGGCAGCAACCGGGGCAGCAGAGGCAGGGGCAGCAACCGGGGCAGCAGAGACAGGGGCAGCAACCGGGGCAGCAGAGGCAGGGGCAGCAACCGGGGCAGCAGAGGCAGGGGCAGCAACCGGGGCAGCAGAGGCAGGGGCAGCAACCGGGGCAGCAGAGACAGGGGCAGCAAACAGGGGCAGCAGAGGCGGGGGCAGCAAACAGGACAGCAGAGACAGGGGCAGCAGAGGCAGGGTCAGCAACTGGGGCAGCAGAGGCAGGGGCAGCAAACAGGACAGTAGAGGCGGGGATTGGACAGAGCCAGGCAGTCACCAGCCTGGGTCACCCCCCGTTGGCAAAGCTGTCCTCAGCTTATATGCTGTATCTATGGGCTTCTCAAGCTCAGTGAACTCTGGAGGTGGCCTGGTTTTAACCTAGAAAGTCATAGCTGCTGTGACCTGGAGCTGTAGTGTTCTCATGGGCTCTGTGCTCACGATGGCTGCTCGTGCTCACAAACTTCTTTGTTAAATGCCTCTTTAGGATAGAAGCTAGGGCATCAGCTCACAGAGGTGACCGCCATGCAAGAGAATGTCCCAGAACACTCAGAGACATTCTGAGTCTTGTTTGAGAGAGAGTCTCATATAGCCCAGGTTAACCTTGAACTCCTGCTCTTCCTGGCCACTACACCTGGCTTTCCAAGGACGCTCTGAATGTTCCCTACCCAAGAAAAGCTTGGAAGGGATTTGCCTGGTGGCAGTCTGGTGTACAGGTATTGCTAATGGCTGTGGAATGAGGGATAATGATACCAGGCTCTGCTTCTGTGTGTTGTGCCAG
Seq C2 exon
AGCCCAGCAGATGACAGGAGCTGCAGTCCAGACCTACCTCCTAGAGAAAACCCGTGTGGCCTGTCAGGCCTCCAGTGAGAGGAACTTTCACATCTTCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527:ENSMUST00000093969:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types