BtaINT0097876 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13174035-13174772:-
Coord C1 exon
chr19:13174703-13174772
Coord A exon
chr19:13174138-13174702
Coord C2 exon
chr19:13174035-13174137
Length
565 bp
Sequences
Splice sites
5' ss Seq
TGGGTAATC
5' ss Score
4.2
3' ss Seq
TCCAACCTGCTTGTGCCCAGGGC
3' ss Score
6.8
Exon sequences
Seq C1 exon
GGAACGCGTGCACGCTGAGGAACAGCAACAGCAGCCGCTTCGGGAAGTTCATCCAGCTCCAGCTGAATGG
Seq A exon
GTAATCTCTGCGGCCACCCTGGCTGCTGGGGGGCCGGGCGAGCTGGGGGGCAGTGCCCAGCCTGGGCTGCCACCACGGGCAGAACCCTGCCGTGCCTGGCAGGTTCGTATGTGGGGTGAGTGAACCTGTGCGTACACTTTGAACCTGGGGAACTCTAGGTGCCCCAGCCTGAGGGACCCAGGGACTGTGCCTGTCCTGACACGTGCCTTCTGGCTTCTGCCCTTCGCAGAGACTTCTAGTTAAAACTGTCACTTAAAACTGTCACCTTGGCCGCATCTCTGAGCTTAAGGCTGGGGCTTCTCTTCCTGCCTTGGGCTGGGGCAAAGTGAGGCACCGAGGCCTGGGCCCTGTCCCTGAGCTGGTTGGAGGGGACTGTCCCAGCCCTTCCCCTCCCTGCCCCTGCCCCCACCCCAGGACCTGCTGAGAGGTCCTCCCCAGTCCTCATGACCCCCTTTGCTTAAGTGGAAGAGCTGGGGCGAGGCTGCAGCCTGGCACACAGTAAGTTCCCAATAAACGGCTCTGGAGTGAACGGACCACTGACGGGCTCCAACCTGCTTGTGCCCAG
Seq C2 exon
GGCCCAGCAGATGACGGGAGCTGCAGTTCAGACCTACCTCCTGGAGAAAACTCGAGTGGCCTGCCAGGCCCCCAGCGAGAGGAACTTCCACATATTCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675:ENSBTAT00000064679:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]