GgaINT0130564 @ galGal3
Intron Retention
Gene
ENSGALG00000005374 | MYO19
Description
NA
Coordinates
chr19:8091760-8092036:-
Coord C1 exon
chr19:8091967-8092036
Coord A exon
chr19:8091863-8091966
Coord C2 exon
chr19:8091760-8091862
Length
104 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
GCCTTTTTTTTTCCCTCTAGGTT
3' ss Score
13.93
Exon sequences
Seq C1 exon
GCAATGCATGTACTCTGAGGAACAACAACAGTAGCCGTTTTGGGAAATATATTCAGCTTCACTTGGACAG
Seq A exon
GTAATAATTACTGTTTAAATGGCTTATCTATTGTCTTCTCCCTCTAAATCTGATGAGGGGAATTTTGTTAAAATCTGCTCTTTGGCCTTTTTTTTTCCCTCTAG
Seq C2 exon
GTTCCACCATCTGAGTAGTGCTTCCATTCAGACTTTCCTTTTGGAGAAGACAAGAGTTGCCTATCAGGCCCCCAATGAAAGAAACTTTCATATATTTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374:ENSGALT00000039165:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGCATGTACTCTGAGGA
R:
GTTTCTTTCATTGGGGGCCTGA
Band lengths:
155-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]