HsaINT0108462 @ hg38
Intron Retention
Gene
ENSG00000278259 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr17:36515113-36515990:-
Coord C1 exon
chr17:36515858-36515990
Coord A exon
chr17:36515183-36515857
Coord C2 exon
chr17:36515113-36515182
Length
675 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
AACATAGGTGTGATCTGTAGGGA
3' ss Score
3.73
Exon sequences
Seq C1 exon
ACATGGACGTCTCGCTGCCTAATGAAGTTCTATGCTGTGGTGGCCACCTCACCTGCATCTTGGGAGAGCCACAAGATTGCAGAGAGGATAGAACAGAGGATCCTGAACTCCAACCCTGTCATGGAAGCTTTTG
Seq A exon
GTGAGCTTGGGCTCCTTTGCACAGTATCTCAGTCCCATTTCCTCTGGGATTTTCCACCTTCCAGGGAGAGGGACAGTGCTTTGAGACCCTCTCTTGGGTGGGGGTGGAGGATGAGTGTATCCTTCACTGCCTCAGATCCCCAACCTCTCCCTGGTACTCCTTAGCATCATTCTAACAGAGGTCATGTCATTCAGTCCTCTTCCTCGCTCCAGCCTAGGCACACATAACAGTCGTGCTGGAGAAGACCTGGTGGCTTAGCTCGTCCAAATTCTGTCTTTCTATCCAGTTTCCTGATGGTTCAATGAAGGGTACTTGTTAAGGGATACAAGGTGATTAGTGTTTGTGTTGGCACTGGAACCCAGATGTGCCTTCCTGTCTAAAGTCAGTAGTGACAGCTGATTGTTTTTGACCTTTCCCTTCAAAGAAAGGTCCCTGACTGCCTAGGCTTGCTCATTCCAATTTCTTGCCAGGAATTTCTTCTAACTCCCCTGAATCCCACTTGCTAAAGCATGAGGGCCCATTTTCTAGTCCTGTCCCCTATGACATGAAAACCAACAAAGGGGCCTTTAGGTGACTTGAGCACGGGAACATGACCTCCAGAGACCTGCAGCCACCTTGGCTTATGAGGACTCTGCAAACCCAGGGGAGTGAAATAAACATAGGTGTGATCTGTAG
Seq C2 exon
GGAATGCGTGTACACTGAGGAATAACAACAGCAGTCGCTTTGGGAAGTTCATCCAGCTCCAGCTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000278259:ENST00000610930:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(13.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCTCGCTGCCTAATGAAG
R:
GCTGGAGCTGGATGAACTTCC
Band lengths:
190-865
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development