MmuINT0104103 @ mm9
Intron Retention
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84705578-84706896:+
Coord C1 exon
chr11:84705578-84705710
Coord A exon
chr11:84705711-84706826
Coord C2 exon
chr11:84706827-84706896
Length
1116 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
AACCCGGGTGTGGTCTCTAGGGA
3' ss Score
6.71
Exon sequences
Seq C1 exon
ACATGGACATCCCGATGCCTGATGAAGTTCTATGCGGTGGTGGCTGCCTCACCGACTTCCTGTGAGAACCATAAGATTGCAGAGAGGATTGAACAGCGGATTCTGAACTCCAACCCTGTGATGGAAGCTTTTG
Seq A exon
GTAAGCTCAGTGTCCTTGCACTGCCCTCTGGTGCCATTTCCTCTGCGACCCGCCCCCCACTACCTAGGTGCTAACCTCTCCCCAGATTCCCTCAGCTTCTGTCTGCTAAAGGTGCTACCATATGGGGATAAGCTTGGTGCTAGAGCCTAGCATCTGCAAAACCCCTTTTCTAGATAGAGCTGGTACCATCTGGCACATCTAAAACAGCTGCATAGAAAGTGCCTTTGCTCATCTGGTCAAAAGCTTGTCTTTCCGTTGAGTTTCCTAACGTGCCAAAAGAAGGAAGTTTGTCAAAGGTGGCATAGCTTTTGTGGGGGTGTTGTTTGGGAGGTATTTTCCTTTTTTGTTTTGTTTTTGTTATTGTTTTTAGGGAAGGGTGTTGTTTTGGTTTGTTTGGGATTTTGTGAGTTTTTGGTTTGTTGTCTTCCCCCCCAGACAGTTCCCTCTATCTAGCTCTGGCTGTCCTGGAACTCACGAAGACCAGGCTGTCCTCACACTCACAGATCTGTCAGCCTCCAGCTCTGATTAAAGGAGTGTGCAGTGACACCTGGCTTACGGTGGCGTACCTTTTAGTGTCCACATGCTGTGTCTGCCTAAAACCTGTAGGAAGCACTTGCTCTCACCTCTTCCTTGACTGGGGCTGAAGAGAGAACTCAGTGGTTCAAAGCATTTATTGCTCTTGTAGAAGACCTGAGTTCAGTTCCCAGCATCCACATGATGGCTCACAACTCCCATAACCTCATCCCATAATTCCAGTTCTAAGGGATGGTCCACCTCTTCTGACCTCTTGCGGGTACTAGGCACGATGTGGCACACATACATGAATGCAGACAAAACACTCACACACATAGAAGAAAAAAAGCAGCCCTGATTAGCTAGGCTTGTTTCCTGGTCCTGGTCCTGGTCCTGGTCCTGGTCCTGGTCCTGGTCCTGGTCCTGGTCCAGAACCCAGTTGCCAAAGCCCACGTGCCCATTCCATAATCCTGACCCTCATGACAGAAAAATCAGCAAAGGGGCCTTTAGGTGACAGGGCCTGTAGAGACGGGCACACCCACAGCAGCTTGTGAAAGTTGTGCATGCCAGGAGAGCGGGTGTAAACCCGGGTGTGGTCTCTAG
Seq C2 exon
GGAACGCATGCACACTGAGGAACAGCAACAGCAGCCGCTTCGGGAAGTTCATTCAGCTCCAACTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527-Myo19:NM_025414:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(33.5=75.4)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.5=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGACATCCCGATGCCTGAT
R:
TGTTGAGTTGGAGCTGAATGAACT
Band lengths:
200-1316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: