HsaINT0108462 @ hg19
Intron Retention
Gene
ENSG00000141140 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:26234]
Coordinates
chr17:34870956-34871833:-
Coord C1 exon
chr17:34871701-34871833
Coord A exon
chr17:34871026-34871700
Coord C2 exon
chr17:34870956-34871025
Length
675 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
AACATAGGTGTGATCTGTAGGGA
3' ss Score
3.73
Exon sequences
Seq C1 exon
ACATGGACGTCTCGCTGCCTAATGAAGTTCTATGCTGTGGTGGCCACCTCACCTGCATCTTGGGAGAGCCACAAGATTGCAGAGAGGATAGAACAGAGGATCCTGAACTCCAACCCTGTCATGGAAGCTTTTG
Seq A exon
GTGAGCTTGGGCTCCTTTGCACAGTATCTCAGTCCCATTTCCTCTGGGATTTTCCACCTTCCAGGGAGAGGGACAGTGCTTTGAGACCCTCTCTTGGGTGGGGGTGGAGGATGAGTGTATCCTTCACTGCCTCAGATCCCCAACCTCTCCCTGGTACTCCTTAGCATCATTCTAACAGAGGTCATGTCATTCAGTCCTCTTCCTCGCTCCAGCCTAGGCACACATAACAGTCGTGCTGGAGAAGACCTGGTGGCTTAGCTCGTCCAAATTCTGTCTTTCTATCCAGTTTCCTGATGGTTCAATGAAGGGTACTTGTTAAGGGATACAAGGTGATTAGTGTTTGTGTTGGCACTGGAACCCAGATGTGCCTTCCTGTCTAAAGTCAGTAGTGACAGCTGATTGTTTTTGACCTTTCCCTTCAAAGAAAGGTCCCTGACTGCCTAGGCTTGCTCATTCCAATTTCTTGCCAGGAATTTCTTCTAACTCCCCTGAATCCCACTTGCTAAAGCATGAGGGCCCATTTTCTAGTCCTGTCCCCTATGACATGAAAACCAACAAAGGGGCCTTTAGGTGACTTGAGCACGGGAACATGACCTCCAGAGACCTGCAGCCACCTTGGCTTATGAGGACTCTGCAAACCCAGGGGAGTGAAATAAACATAGGTGTGATCTGTAG
Seq C2 exon
GGAATGCGTGTACACTGAGGAATAACAACAGCAGTCGCTTTGGGAAGTTCATCCAGCTCCAGCTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141140-MYO19:NM_025109:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(29.3=100),PF131481=DUF3987=PD(54.4=82.2),PF118703=DUF3390=PD(66.7=93.3)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.4=100),PF118703=DUF3390=PD(21.2=70.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCTCGCTGCCTAATGAAG
R:
GCTGGAGCTGGATGAACTTCC
Band lengths:
190-865
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)