GgaINT0130563 @ galGal4
Intron Retention
Gene
ENSGALG00000005374 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:8138341-8138758:-
Coord C1 exon
chr19:8138626-8138758
Coord A exon
chr19:8138411-8138625
Coord C2 exon
chr19:8138341-8138410
Length
215 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAAA
5' ss Score
3.23
3' ss Seq
TGTCTCTGGTAATTTCACAGGCA
3' ss Score
7.6
Exon sequences
Seq C1 exon
ACCTGGACATCTCGCTGCCTTATGAAATTTTATGCTTCTGTTGCTGCTTCTGCTACTTCCCCAAAAGGCAATGAAGCTGTGGAACGGATAGAGAAGAGAGTGTTGGATTCCAACCCTATCATGGAAGCATTTG
Seq A exon
GTAAAAGTAGCTTTTTTAACAGCATGGACAAGTAGTGGCCATGGTGGGAATTTTCTTTTTTAATGTACAAATCTAAGCTACTTCTTGTTCCTCTCCTTAAAAGACAAACTCTTCAAATACTGGAACTGTATACAAATCAACTTTAATGTCTGTATGTCCTACGTGGAAGAGTAAAATGACTGATGATGTTGTTTGTGTCTCTGGTAATTTCACAG
Seq C2 exon
GCAATGCATGTACTCTGAGGAACAACAACAGTAGCCGTTTTGGGAAATATATTCAGCTTCACTTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374:ENSGALT00000039165:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACATCTCGCTGCCTTATG
R:
CCAAGTGAAGCTGAATATATTTCCCA
Band lengths:
196-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]