BtaEX6084927 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13162466-13165194:-
Coord C1 exon
chr19:13165124-13165194
Coord A exon
chr19:13164180-13164283
Coord C2 exon
chr19:13162466-13162581
Length
104 bp
Sequences
Splice sites
3' ss Seq
CCGCCTGCCTCGGCTTCCAGGGT
3' ss Score
8.41
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTCCTGAGCCAGCTGGAGGCCTGTGGCCTCGTGGAGACCATCCACATCAGTGCCGCTGGCTTCCCCATCCG
Seq A exon
GGTCTCTCACCGGAACTTCATGGAGCGGTACCAGCTACTGAGAAGGCTCCGTCCTGCCATAACCCCCAGCCCCCACGGCCCGTGTCCAGATGGAGGGCGCTCAG
Seq C2 exon
AGTGCCCTCCATGCACCGAGCCGGCCACACTGCAGGGCCTCCTCCAGGAGATCCTCCACACACTGCCAGCCCCACTGCACTGCGGCAGGACCAAGGTGTTCATGACCGACTCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675-'31-40,'31-36,33-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.407 C2=0.077
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.3=100)
A:
PF0006316=Myosin_head=PD(3.9=69.4)
C2:
PF0006316=Myosin_head=PD(4.9=87.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGAGCCAGCTGGAGG
R:
GTGGAGTCGGTCATGAACACC
Band lengths:
186-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]