MmuEX6088393 @ mm9
Exon Skipping
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84716659-84720904:+
Coord C1 exon
chr11:84716659-84716729
Coord A exon
chr11:84719042-84719145
Coord C2 exon
chr11:84720738-84720904
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTGCTTGCTTTGGCTTCTAGGGT
3' ss Score
8.55
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTCCTGAACCAGTTAGAGGCCTGTGGCCTTGTGGAAACCATTCACATCAGTGCTGCTGGCTTTCCCATCCG
Seq A exon
GGTCTCTCACCAGAACTTCATAGAAAGATATAAACTACTGAGAAGGCTCGGACCTCGCATGTCCTCTGGCCTCGGGGGCCTGGAGCCTGCCGAAGGGTCCTCTG
Seq C2 exon
AGCAGCCTCTGTGTGCCAAGGAGGCCACACTGCAACCTCTACTACAGGACATTCTCCATGCTCTGCCAGCTTTAATTCAGACAGCAGCCACTCCCAGTGACCCGGCTAAGAACACACAAATCCCACTGTACTGTGGCAGGACAAAGATCTTCATGACTGACTCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527-'27-28,'27-25,28-28=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.148 C2=0.018
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.5=100)
A:
PF0006316=Myosin_head=PD(4.3=77.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAACCAGTTAGAGGCCT
R:
TGGAGTCAGTCATGAAGATCTTTGT
Band lengths:
235-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: