GgaEX0027787 @ galGal4
Exon Skipping
Gene
ENSGALG00000005374 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:8128767-8132437:-
Coord C1 exon
chr19:8132330-8132437
Coord A exon
chr19:8130646-8130755
Coord C2 exon
chr19:8128767-8128930
Length
110 bp
Sequences
Splice sites
3' ss Seq
ACTGTACTTTTGTCTATCAGGAT
3' ss Score
9.2
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
AGTTCACTTGAAAATCTCATGCAGATCTTGAACAGCACCGAACCACATTACATCCGATGCATCAAGCCTAATGCTGACTGCCAGGCAATGACTTTTAGAAAAGAAGAG
Seq A exon
GATCTCTTTTCAAAGTTTCACCGATCGCTATGAAATACTGAGAAAGTCACGTAGGTCCAGCAAAAACAATGCATGTGATAAAAGCAACTACCATACTGCCAAGAAGAAAG
Seq C2 exon
GTGAGACTGCAGCGGTGGATGACAACAAAGCATCACGTTCTGTCATCGCTGAGATCCTGCAGAATGTTGTTACAGGACAAAGTGCTGCTGAGCCCACAGGGAAGGGATCAGAGAATACTTCAGTGTATTGTGGCAAAACCAAAGTATTTATGGCTAATTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374_MULTIEX1-3/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.050
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
PF0006316=Myosin_head=FE(2.4=100)
C2:
PF0006316=Myosin_head=PD(8.0=93.3)
Main Skipping Isoform:
ENSGALT00000039165fB9700
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATCTTGAACAGCACCGA
R:
AGCCATAAATACTTTGGTTTTGCC
Band lengths:
243-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]