GgaEX0027787 @ galGal3
Exon Skipping
Gene
ENSGALG00000005374 | MYO19
Description
NA
Coordinates
chr19:8082393-8086063:-
Coord C1 exon
chr19:8085956-8086063
Coord A exon
chr19:8084272-8084381
Coord C2 exon
chr19:8082393-8082556
Length
110 bp
Sequences
Splice sites
3' ss Seq
ACTGTACTTTTGTCTATCAGGAT
3' ss Score
9.2
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
AGTTCACTTGAAAATCTCATGCAGATCTTGAACAGCACCGAACCACATTACATCCGATGCATCAAGCCTAATGCTGACTGCCAGGCAATGACTTTTAGAAAAGAAGAG
Seq A exon
GATCTCTTTTCAAAGTTTCACCGATCGCTATGAAATACTGAGAAAGTCACGTAGGTCCAGCAAAAACAATGCATGTGATAAAAGCAACTACCATACTGCCAAGAAGAAAG
Seq C2 exon
GTGAGACTGCAGCGGTGGATGACAACAAAGCATCACGTTCTGTCATCGCTGAGATCCTGCAGAATGTTGTTACAGGACAAAGTGCTGCTGAGCCCACAGGGAAGGGATCAGAGAATACTTCAGTGTATTGTGGCAAAACCAAAGTATTTATGGCTAATTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374_MULTIEX1-2/3=C1-C2
Average complexity
C2
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.066 C2=0.066
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
PF0006316=Myosin_head=FE(4.0=100)
C2:
PF0006316=Myosin_head=PD(7.3=92.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATCTTGAACAGCACCGA
R:
AGCCATAAATACTTTGGTTTTGCC
Band lengths:
243-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]