BtaEX6085200 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015527 | MYO1D
Description
myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
Coordinates
chr19:17776536-17782897:+
Coord C1 exon
chr19:17776536-17776589
Coord A exon
chr19:17778048-17778143
Coord C2 exon
chr19:17782781-17782897
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTATTTCGATGTTTTTCAGCTG
3' ss Score
8.28
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
TCTCGAGTTATTGTGCAACAGCCAGGAGAAAGGAGCTTTCATTCTTTCTATCAG
Seq A exon
CTGCTGCAAGGAGGTTCGGACCAGATGCTACGTTCTCTGCACCTCCAGAAATCCTTGTCATCCTACAGCTACATCCATGTTGGAGCCCAGCTAAAG
Seq C2 exon
TCGTCTATCAATGATGCTGCAGAATTCAAAGTAGTAGCCGATGCCATGAAAGTAATTGGCTTCAAACCCGAGGAGATTCAAACAGCGTATAAAATCTTGGCTGCTATTCTTCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015527-'6-10,'6-9,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(2.5=100)
A:
PF0006316=Myosin_head=FE(4.6=100)
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGTTATTGTGCAACAGCCA
R:
AGTGAAGAATAGCAGCCAAGA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]