MmuEX6088150 @ mm9
Exon Skipping
Gene
ENSMUSG00000035441 | Myo1d
Description
myosin ID [Source:MGI Symbol;Acc:MGI:107728]
Coordinates
chr11:80490324-80495937:-
Coord C1 exon
chr11:80495884-80495937
Coord A exon
chr11:80493522-80493617
Coord C2 exon
chr11:80490324-80490440
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCAATTAAATATTTTTCAGCTC
3' ss Score
7.09
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TCTCGTGTGATTGTGCAGCAGCCTGGAGAACGGAGCTTCCATTCTTTCTATCAG
Seq A exon
CTCCTCCAGGGAGGTTCTGAGCAGATGCTGCACTCTCTTCACCTGCAGAAGTCACTCTCATCCTACAACTACATCCGTGTGGGGGCACAGCTGAAG
Seq C2 exon
TCTTCCATCAATGACGCTGCTGAGTTCAAAGTTGTAGCTGATGCCATGAAAGTAATTGGATTCAAACCTGAGGAGATTCAAACTGTGTATAAAATTTTGGCTGTTATTCTTCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035441-'4-8,'4-7,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(2.5=100)
A:
PF0006316=Myosin_head=FE(4.6=100)
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCGTGTGATTGTGCAGCAG
R:
CAAGTGAAGAATAACAGCCAAAATT
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: