RnoEX0057301 @ rn6
Exon Skipping
Gene
ENSRNOG00000003276 | Myo1d
Description
myosin ID [Source:RGD Symbol;Acc:621321]
Coordinates
chr10:68050093-68055338:-
Coord C1 exon
chr10:68055285-68055338
Coord A exon
chr10:68052888-68052983
Coord C2 exon
chr10:68050093-68050209
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTAAACTAAATATTTTTCAGCTA
3' ss Score
6.72
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TCTCGTGTAATTGTGCAACAGCCCGGAGAACGAAGCTTCCATTCTTTCTATCAG
Seq A exon
CTACTTCAGGGAGGTTCCGAGCAGATGCTGCATTCTCTACATCTGCAGAAATCACTCTCATCCTACAACTACATCCGTGTGGGGGCACAACTGAAG
Seq C2 exon
TCTTCCATCAATGATGCTGCAGAGTTCAAAGTTGTAGCTGATGCCATGAAAGTAATTGGATTCAAACCTGAGGAGATTCAAACAGTGTATAAAATTCTGGCTGCTATTCTTCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003276-'15-13,'15-12,17-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(2.5=100)
A:
PF0006316=Myosin_head=FE(4.6=100)
C2:
PF0006316=Myosin_head=FE(11.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTAATTGTGCAACAGCCCG
R:
CAAGTGAAGAATAGCAGCCAGA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]