DreEX0006131 @ danRer10
Exon Skipping
Gene
ENSDARG00000036863 | MYO1D
Description
myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
Coordinates
chr12:28383584-28386775:-
Coord C1 exon
chr12:28386722-28386775
Coord A exon
chr12:28386335-28386430
Coord C2 exon
chr12:28383584-28383700
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTTTAAATGTGTTTTTCAGCTG
3' ss Score
9.19
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
TCCCGAGTCATCTTTCAGCAGGAAGGAGAGAGGAGTTTCCACTCTTTCTACCAG
Seq A exon
CTGGTGAAAGGAGCTCCAGATGCTCAGCTGCGATCCCTGCACATTCAGAGAGACCCCACAGCATATAACTACATTAAAGTGGGAGGCCAGCTAAAG
Seq C2 exon
TCGTCAATAAATGACAGTGCGGAATTTAAAGCTGTTGCTGATGCAATGAAAGTCATTGGATTTACTACAGAAGAGATTCAGACGGTCTACAAGATCCTGGCTACCATCTTGCATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036863-'5-5,'5-4,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(2.5=100)
A:
PF0006316=Myosin_head=FE(4.6=100)
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGAGTCATCTTTCAGCAGG
R:
CAGATGCAAGATGGTAGCCAGG
Band lengths:
170-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]