BtaEX6085575 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007946 | PIPOX
Description
Bos taurus pipecolic acid oxidase (PIPOX), mRNA. [Source:RefSeq mRNA;Acc:NM_001014878]
Coordinates
chr19:20975174-20976535:+
Coord C1 exon
chr19:20975174-20975326
Coord A exon
chr19:20975714-20975872
Coord C2 exon
chr19:20976460-20976535
Length
159 bp
Sequences
Splice sites
3' ss Seq
CCGCTTTGATTGGGAGCCAGGTC
3' ss Score
-0.7
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
ACCCTGCGGATCAACGTGTGTTACTGGCAAGAGAAGGTTCCTGGAAGCTACAGTGTGTCCCAGGCCTTTCCGTGTTTCATGGGCCTGGGCCTCAGCCTGGCTCCTCACCACATCTACGGGCTGCCCTCCAGAGAGTACCCAGGGCTGATGAAG
Seq A exon
GTCTGCTATCACCACGGCAACAATGCAGATCCCGAGGAGCGGGACTGCCCAGCAGCTTTCTCAGACATCCAAGATGTCCACATCCTGAGCGGTTTTGTCAGAGATCACTTACCTGACCTGCAGCCCGAGCCTGCTGTGATGGAGCATTGCATGTACACG
Seq C2 exon
AACACCCCCGATGGGCACTTCGTTCTTGATAGACACCCAAAGTACGACAACATTGTCATTGGTGCTGGATTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007946-'11-9,'11-7,12-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(14.0=100)
A:
PF0126619=DAO=FE(14.5=100)
C2:
PF0126619=DAO=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCGGATCAACGTGTGTTA
R:
CAGAGAATCCAGCACCAATGACA
Band lengths:
227-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]