GgaEX7009980 @ galGal4
Exon Skipping
Gene
ENSGALG00000026392 | PIPOX
Description
pipecolic acid oxidase [Source:HGNC Symbol;Acc:HGNC:17804]
Coordinates
chr19:5927473-5928006:+
Coord C1 exon
chr19:5927473-5927619
Coord A exon
chr19:5927690-5927848
Coord C2 exon
chr19:5927931-5928006
Length
159 bp
Sequences
Splice sites
3' ss Seq
CCACCGAGCGCTGTCCCCAGGTG
3' ss Score
6.68
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
CCCCTGCGCATCGACGTGTGCTACTGGAGGGAGAAGGAGCCCGGCAGCGGCGGCTCGGTCACCCCCTGCTTCATGGCCACGGGGCTGCCCTACGCTCCCCATGGGATATATGGGCTGCCCGCCCTCGAGTACCCCGGGCTGGTCAAG
Seq A exon
GTGTGCTACCATCATGGCAGCCCCACTGACCCCGAGGAGAGGGACCGGACCCCCCCGGGCTCCCCACGTCCCCACGTCGCCCTCTTGAGCAACTTCATCAGCAGTTACCTGCCTGGGCTGGAGCCGCAGCCGGCTGTGCTGGAGAGCTGCCTCTACACG
Seq C2 exon
AACACCCCGGATGAAGACTTCATTCTGGACCGGCACCCCAAGTACAGCAACATCATCATTGGGGCCGGCTTCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026392-'6-9,'6-7,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.302 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(13.6=100)
A:
PF0126619=DAO=FE(14.8=100)
C2:
PF0126619=DAO=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCGCATCGACGTGTG
R:
GAGAAGCCGGCCCCAATGAT
Band lengths:
219-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]