DreEX0055717 @ danRer10
Exon Skipping
Gene
ENSDARG00000055591 | pipox
Description
pipecolic acid oxidase [Source:ZFIN;Acc:ZDB-GENE-110627-2]
Coordinates
chr15:24220786-24229664:-
Coord C1 exon
chr15:24229512-24229664
Coord A exon
chr15:24225827-24225976
Coord C2 exon
chr15:24220786-24220861
Length
150 bp
Sequences
Splice sites
3' ss Seq
GCATGCATGTGTCTGAGCAGGTG
3' ss Score
5.73
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GTTGTAAAGATTAACGTTTGCTACTGGAAGGAGAAGATCCCAGGAACCTACAGTGTCGACCAGAGCTTTCCATGCTTTATACAGATGGAGCCGAAAGAGGGGGAATATGACATTTATGGCCTTCCATCCAATGAATATCCAGGACTAATGAAA
Seq A exon
GTGTGTTACCACATGGGCAGTGAGACCGACCCGGATGAGCGGGATAAACAGACGGATAGAGGGGACATCGATATTCTAGCGCGCTACGTCACCCGCTGTCTCCCTGGGCTGGTGCCAGCACCTGCTGTGGTGGAGAGCTGCATGTATACG
Seq C2 exon
GTCACACCAGACCACCACTTCGTCCTTGATTCCCACCCGTCCTATGGCAACATCATCATTGGCGCTGGATTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055591-'5-8,'5-7,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.220 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(14.1=100)
A:
PF0126619=DAO=FE(13.8=100)
C2:
PF0126619=DAO=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAAAGATTAACGTTTGCTACTGGA
R:
CTGAGAATCCAGCGCCAATGA
Band lengths:
227-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]