MmuEX0035254 @ mm9
Exon Skipping
Gene
ENSMUSG00000017453 | Pipox
Description
pipecolic acid oxidase [Source:MGI Symbol;Acc:MGI:1197006]
Coordinates
chr11:77695003-77696265:-
Coord C1 exon
chr11:77696119-77696265
Coord A exon
chr11:77695620-77695778
Coord C2 exon
chr11:77695003-77695078
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCAGTTGGGGGTGGGGGTAGATC
3' ss Score
-0.02
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
ACCCTTAGGATCAATGTGTGTTACTGGCGAGAGAAGGTCCCTGGGAGCTATGGTGTATCACAAGCTTTTCCATGCATCCTGGGTCTGGATCTGGCCCCCCACCACATCTATGGACTGCCAGCATCCGAGTACCCGGGGCTGATGAAG
Seq A exon
ATCTGCTATCACCATGGTGACAATGTGGACCCAGAGGAGCGGGACTGCCCCAAAACCTTCTCAGACATCCAAGACGTTCAAATTCTATGCCACTTTGTCAGAGATCATTTACCAGGCCTGCGGGCTGAGCCAGACATCATGGAACGCTGCATGTACACG
Seq C2 exon
AATACTCCTGATGAGCACTTTATTCTTGATTGCCACCCAAAGTATGACAACATTGTCATCGGCGCTGGATTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017453_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(13.5=100)
A:
PF0126619=DAO=FE(14.6=100)
C2:
PF0126619=DAO=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGATCAATGTGTGTTACTGGCG
R:
CAGAGAATCCAGCGCCGATG
Band lengths:
218-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: