BtaEX6085737 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008424 | ABR
Description
Bos taurus active BCR-related gene (ABR), mRNA. [Source:RefSeq mRNA;Acc:NM_001046204]
Coordinates
chr19:22422403-22423704:+
Coord C1 exon
chr19:22422403-22422462
Coord A exon
chr19:22422734-22422843
Coord C2 exon
chr19:22423565-22423704
Length
110 bp
Sequences
Splice sites
3' ss Seq
CCTGCCTTGCCCCCAACCAGATC
3' ss Score
7.89
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
CTGGATCCACAAACTGTAGAAACCAAGAACTGGCACACCGATGTGATTGAGATGAATGGG
Seq A exon
ATCAAAGTGGAATTCTCCATGAAATTCACTAGCCGAGACATGAGCCTGAAGAGGACCCCCTCCAAAAAGCAGAGCGGCGTCTTCGGTGTGAAGATCAGCGTGGTGACCAA
Seq C2 exon
GCGGGAGCGCTCCAAGGTGCCCTACATCGTGCGGCAGTGTGTGGAGGAGGTGGAGAAGCGGGGCATCGAGGAAGTTGGCATCTACCGGATATCAGGGGTGGCCACAGACATCCAGGCGCTGAAGGCCGTCTTTGATGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008424-'49-38,'49-36,50-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062022=RhoGAP=PU(26.1=83.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCCACAAACTGTAGAAACCA
R:
GGCATCAAAGACGGCCTTCAG
Band lengths:
198-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]