MmuEX0003331 @ mm9
Exon Skipping
Gene
ENSMUSG00000017631 | Abr
Description
active BCR-related gene [Source:MGI Symbol;Acc:MGI:107771]
Coordinates
chr11:76237536-76238828:-
Coord C1 exon
chr11:76238769-76238828
Coord A exon
chr11:76238416-76238525
Coord C2 exon
chr11:76237536-76237675
Length
110 bp
Sequences
Splice sites
3' ss Seq
TACTCAACCCCCTTGACCAGATC
3' ss Score
4.12
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
CTGGATCCACAGACAGTAGAAAGCAAGAACTGGCATACGGACGTGATTGAAATGAATGGG
Seq A exon
ATCAAAGTGGAATTCTCCATGAAATTTACCAGCCGTGACATGAGCCTGAAGAGGACCCCATCCAAAAAGCAGACAGGCGTCTTTGGAGTGAAGATCAGCGTGGTGACCAA
Seq C2 exon
GCGGGAGCGCTCCAAGGTGCCCTACATCGTCCGGCAATGCATAGAAGAGGTGGAGAAGAGGGGCATTGAGGAGGTTGGCATCTACAGGATATCAGGGGTGGCCACGGACATCCAGGCCCTGAAGGCTGTCTTTGATGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017631-'27-35,'27-33,28-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062022=RhoGAP=PU(26.1=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCACAGACAGTAGAAAGCA
R:
TGGCATCAAAGACAGCCTTCA
Band lengths:
198-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: