DreEX6014041 @ danRer10
Exon Skipping
Gene
ENSDARG00000095180 | ABR (2 of 2)
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr5:61948324-61950479:+
Coord C1 exon
chr5:61948324-61948410
Coord A exon
chr5:61948476-61948585
Coord C2 exon
chr5:61950340-61950479
Length
110 bp
Sequences
Splice sites
3' ss Seq
GACTTTTATTTTCTTTTTAGATT
3' ss Score
10.41
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CTGGACCCACAGACGGTGCAGTCCAAAAACTGGCACATGGATGTCATAGAAATGAACGGGGTACGGATTTACTTCTCATCAAATATG
Seq A exon
ATTAAAGTAGAGTTTTCGATGAAGTTTACAAGCCGAGACTTGAGCTTGAAGCGGACGCCGTCTAAGAAACAGAGCGGCGTGTTTGGAGTCAAAATCAGCGTGGTGACAAA
Seq C2 exon
ACGCGAGCGCTCCAAGGTGCCTTATATTGTGCGGCAGTGCATAGAGGAGGTGGAGAAGAGAGGGATTGATGAAGTGGGCATTTACAGGATCTCTGGAGTGGCCACAGACATCCAGGCCCTCAAAGCTGCGTTTGACGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095180-'2-2,'2-1,3-2=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062022=RhoGAP=PU(26.0=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGACGGTGCAGTCCAA
R:
CGTCAAACGCAGCTTTGAGG
Band lengths:
218-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]