RnoEX0005585 @ rn6
Exon Skipping
Gene
ENSRNOG00000056837 | Abr
Description
ABR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1306279]
Coordinates
chr10:64572393-64573705:-
Coord C1 exon
chr10:64573646-64573705
Coord A exon
chr10:64573294-64573403
Coord C2 exon
chr10:64572393-64572532
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTACTCAACCCCCTGACCAGATC
3' ss Score
4.5
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
CTGGATCCACAGACAGTAGAAAGCAAGAACTGGCATACGGATGTGATTGAAATGAATGGG
Seq A exon
ATCAAAGTGGAATTCTCCATGAAATTTACCAGCCGTGACATGAGCCTGAAGAGGACTCCATCCAAAAAGCAGACAGGTGTCTTCGGAGTGAAGATCAGTGTGGTGACCAA
Seq C2 exon
GCGGGAGCGCTCCAAGGTGCCCTACATAGTCCGGCAGTGCATAGAAGAGGTGGAGAAGAGGGGCATCGAGGAGGTTGGCATCTACAGGATATCAGGGGTGGCCACGGACATCCAGGCCCTGAAGGCTGTCTTTGATGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056837-'46-41,'46-38,48-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062022=RhoGAP=PU(26.1=83.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCACAGACAGTAGAAAGCA
R:
TGGCATCAAAGACAGCCTTCA
Band lengths:
198-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]