GgaEX7010013 @ galGal4
Exon Skipping
Gene
ENSGALG00000004364 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr19:6336475-6337009:+
Coord C1 exon
chr19:6336475-6336534
Coord A exon
chr19:6336652-6336761
Coord C2 exon
chr19:6336870-6337009
Length
110 bp
Sequences
Splice sites
3' ss Seq
AGAGATGGTATCTCCCGTAGATC
3' ss Score
5.36
5' ss Seq
AAAGTGCGT
5' ss Score
5.93
Exon sequences
Seq C1 exon
CTGGACCCACAGGCTGTGCAGACCAAGAACTGGCACATGGACGTGATTGAGATGAATGGG
Seq A exon
ATCAAGGTGGAGTTCTCCATGAAGTTCACAAGCAGAGACATGAGCCTGAAGAGGACCCCGTCCAAAAAGCAGACCGGAGTCTTTGGAGTCAAAATCAGCGTCGTGACAAA
Seq C2 exon
GCGTGAGCGCTCCAAGGTGCCTTACATTGTGCGCCAGTGCATCGAGGAGGTGGAGAAGAGAGGCATTGAGGAGGTCGGCATCTACAGGATCTCTGGCGTCGCCACAGACATCCAGGCATTGAAGGCTGTCTTTGATGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004364-'28-25,'28-24,29-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062022=RhoGAP=PU(26.1=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGGCTGTGCAGACCAA
R:
TCGCATCAAAGACAGCCTTCA
Band lengths:
194-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]