BtaEX6086676 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019242 | CHRNB1
Description
Bos taurus cholinergic receptor, nicotinic, beta 1 (muscle) (CHRNB1), mRNA. [Source:RefSeq mRNA;Acc:NM_174516]
Coordinates
chr19:27759274-27763362:+
Coord C1 exon
chr19:27759274-27759421
Coord A exon
chr19:27759876-27760085
Coord C2 exon
chr19:27763139-27763362
Length
210 bp
Sequences
Splice sites
3' ss Seq
TCCCCCCTCACCCCACCAAGAGA
3' ss Score
1.92
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTCACCTACTTCCCCTTTGACTGGCAGAACTGCACCATGGTGTTCAGTTCCTATAGCTATGACAGCTCAGAGGTCAGCCTGCAAACTGGCTTGAGTCCTGAGGGGCAGGAGCGGCAGGAAGTGTATATTCATGAAGGGACCTTTATTG
Seq A exon
AGAATGGCCAATGGGAGATTATCCACAAGCCTTCTCGGCTAATTCAGCCTTCAGTGGATCCTAGGGGAGGCGGGGAAGGACGACGTGAAGAAGTCACCTTCTACCTCATCATTCGCCGGAAGCCTCTCTTTTACCTGGTCAACGTCATTGCCCCATGCATCCTCATCACTCTCCTGGCCATCTTTGTCTTCTACCTGCCACCGGATGCAG
Seq C2 exon
GAGAGAAGATGGGGCTCTCCATCTTTGCCCTGTTGACCCTCACTGTGTTCCTGCTGCTGCTGGCAGACAAAGTACCTGAGACCTCCCTGTCTGTCCCCATCATTATCAAGTACCTCATGTTCACCATGGTCCTCGTCACCTTCTCAGTCATCCTTAGTGTTGTGGTCCTCAACTTGCACCATCGCTCACCCCACACCCACCAAATGCCCCTTTGGGTTCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019242-'7-9,'7-7,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.070 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(22.4=100)
A:
PF0293118=Neur_chan_LBD=PD(18.7=57.7),PF0293211=Neur_chan_memb=PU(81.5=31.0)
C2:
PF0293211=Neur_chan_memb=FE(31.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACCATGGTGTTCAGTTCC
R:
GGTGCAAGTTGAGGACCACAA
Band lengths:
298-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]