RnoEX0021224 @ rn6
Exon Skipping
Gene
ENSRNOG00000014698 | Chrnb1
Description
cholinergic receptor nicotinic beta 1 subunit [Source:RGD Symbol;Acc:2349]
Coordinates
chr10:56393473-56400683:-
Coord C1 exon
chr10:56400536-56400683
Coord A exon
chr10:56399577-56399786
Coord C2 exon
chr10:56393473-56393696
Length
210 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCCTCCCTCCTCCAGAGA
3' ss Score
11.46
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTCACCTACTTCCCCTTTGACTGGCAGAATTGCACCATGGTGTTTAGTTCCTACAGCTATGACAGCTCTGAGGTCAGCCTGAAGACAGGCCCAGATCCTGATGGACAGGAGAGGCAGGAAATCTACATCCATGAAGGGACCTTCATCG
Seq A exon
AGAATGGTCAATGGGAGATTATCCACAAACCCTCTAGGTTAATCCACCTTCCAGGGGATCGAAGAGGAGGGAAGGAAGGACATCGTGAGGAAGTTATCTTCTATCTCATTATTCGGAGGAAGCCTCTCTTCTACCTGGTCAATGTCATTGCCCCGTGCATCCTCATCACCCTCCTGGCCATCTTTGTTTTCTACCTTCCACCAGATGCAG
Seq C2 exon
GAGAGAAGATGGGGCTCTCCATCTTTGCCCTGCTGACCCTCACTGTGTTCTTGCTGCTGCTGGCCGACAAAGTGCCTGAGACCTCCCTGGCGGTCCCCATCATCATCAAGTATCTCATGTTTACCATGATCCTTGTCACCTTCTCAGTTATCCTTAGCGTTGTGGTCCTCAACTTGCACCATCGCTCACCCCACACCCACCAAATGCCCTTTTGGGTCCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014698_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(22.4=100)
A:
PF0293118=Neur_chan_LBD=PD(18.7=57.7),PF0293211=Neur_chan_memb=PU(81.5=31.0)
C2:
PF0293211=Neur_chan_memb=FE(31.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACAGCTCTGAGGTCAGCC
R:
AAAAGGGCATTTGGTGGGTGT
Band lengths:
303-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]