MmuEX0011381 @ mm9
Exon Skipping
Gene
ENSMUSG00000041189 | Chrnb1
Description
cholinergic receptor, nicotinic, beta polypeptide 1 (muscle) [Source:MGI Symbol;Acc:MGI:87890]
Coordinates
chr11:69600383-69607114:-
Coord C1 exon
chr11:69606967-69607114
Coord A exon
chr11:69606201-69606410
Coord C2 exon
chr11:69600383-69600606
Length
210 bp
Sequences
Splice sites
3' ss Seq
ATTCTGTCTCCCTCCTCCAGAGA
3' ss Score
10.43
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTCACCTACTTCCCCTTTGACTGGCAGAACTGCACCATGGTGTTTAGTTCCTACAGCTATGACAGCTCTGAGGTCAGCCTGAAGACGGGCCTGGATCCTGAAGGAGAGGAGAGGCAGGAAGTCTACATTCATGAAGGGACCTTCATTG
Seq A exon
AGAATGGCCAATGGGAGATTATCCACAAACCTTCTAGGTTAATCCAACTTCCAGGGGATCAGAGAGGTGGGAAGGAAGGGCATCATGAGGAAGTTATCTTCTATCTCATTATTCGGCGGAAGCCTCTCTTCTACCTGGTCAACGTCATTGCCCCATGCATCCTCATCACGCTCCTGGCCATCTTTGTCTTCTACCTCCCACCAGATGCAG
Seq C2 exon
GAGAGAAGATGGGGCTCTCCATCTTTGCCCTGCTGACGCTCACTGTGTTCTTGCTGCTGTTGGCCGACAAAGTGCCTGAGACCTCCCTGGCGGTGCCCATCATTATCAAGTACCTCATGTTTACCATGGTCCTTGTCACCTTCTCCGTTATCCTTAGTGTTGTGGTCCTCAACCTGCATCATCGCTCACCCCACACCCACCAAATGCCCTTTTGGGTCCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041189_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(22.4=100)
A:
PF0293118=Neur_chan_LBD=PD(18.7=57.7),PF0293211=Neur_chan_memb=PU(9.3=31.0)
C2:
PF0293211=Neur_chan_memb=FE(31.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACAGCTCTGAGGTCAGCC
R:
AAAAGGGCATTTGGTGGGTGT
Band lengths:
303-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: