BtaEX6086791 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008605 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr19:28107921-28114791:+
Coord C1 exon
chr19:28107921-28108090
Coord A exon
chr19:28108205-28108321
Coord C2 exon
chr19:28114627-28114791
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGCCCGCTGTCTCCCCGCAGCTC
3' ss Score
12.74
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GGGAACAGAACTTCATCAAATCACTGATCCACTTCGATAAAGACAATATCTCAGACAAGGTCCTGAAGAAGATCGGAGCCTACTGTGCCCAGCCCGATTTCCAGCCTGACATCATCGGCCGTGTGTCACTGGCTGCCAAGTCCCTATGCATGTGGGTTCGGGCCATGGAG
Seq A exon
CTCTACGGGCGGCTGTACCGGGTGGTGGAGCCCAAGCGGATCCGCATGAACACCGCATTGGCCCAGCTTCAGGAGAAGCAGGCGGCCCTGGCCGAGGCTCAGGAGAAGCTGCGTGAG
Seq C2 exon
GTGGCTGAGAAACTGGAGATGCTGAAGAAACAGTATGATGAGAAGCTGGCACAGAAGGAGGAGCTTCGCAAGAGGTCTGAGGAGATGGAGATGAAGCTGGAGCGTGCTGGGATGCTGGTGTCCGGGCTGGCTGGCGAGAAGGCCCGATGGGAGGAGACAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008605-'65-65,'65-63,66-65=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.051 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(16.6=100)
A:
PF127772=MT=FE(11.3=100)
C2:
PF127772=MT=FE(16.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGATTTCCAGCCTGACATC
R:
TTTACTGTCTCCTCCCATCGGG
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]