MmuEX6086685 @ mm9
Exon Skipping
Gene
ENSMUSG00000005237 | Dnahc2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69251299-69260246:-
Coord C1 exon
chr11:69260077-69260246
Coord A exon
chr11:69259781-69259897
Coord C2 exon
chr11:69251299-69251463
Length
117 bp
Sequences
Splice sites
3' ss Seq
GCCTGTCTGTCTTTCCACAGTTG
3' ss Score
11.71
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GGGAGCAGAACTTCATCAAGTCATTGATCAACTTTGATAAAGACAACATCTCAGATAAGGTATTGAAGAAGATCGGGGCCTACTGCGCCCAGCCCGACTTCCAGCCTGATATCATTGGCAGAGTCTCCCTGGCTGCTAAGTCCCTCTGCATGTGGGTGCGGGCCATGGAG
Seq A exon
TTGTACGGGCGTCTGTATCGAGTGGTAGAGCCTAAGCGGATCCGAATGAACGCCGCCATGGCCCAGCTTCAGGAGAAGCAAGCAGCCCTAGCTGAAGCCCAGGAAAAGCTGCGAGAG
Seq C2 exon
GTGGCAGAGAAATTGGAGATGCTGAAGAAACAGTATGATGAGAAGCTGGCACAGAAGGAGGAGCTTCGAAAGAAATCGGAGGAGATGGAGCTGAAGCTGGAGCGAGCAGGAATGTTGGTGTCTGGGCTAGCTGGTGAAAAGGCACGATGGGAAGAGACTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-'74-70,'74-69,75-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(16.6=100)
A:
PF127772=MT=FE(11.3=100)
C2:
PF127772=MT=PD(12.5=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAAGATCGGGGCCTACT
R:
CCTTTTCACCAGCTAGCCCAG
Band lengths:
249-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: