MmuEX6086685 @ mm10
Exon Skipping
Gene
ENSMUSG00000005237 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69436138-69447937:-
Coord C1 exon
chr11:69447796-69447937
Coord A exon
chr11:69446279-69446395
Coord C2 exon
chr11:69436138-69436286
Length
117 bp
Sequences
Splice sites
3' ss Seq
GCCTGTCTGTCTTTCCACAGTTG
3' ss Score
11.71
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GCCCTAGAGTCTCTGAACAAGAAGGACATAGGTGAGATCAAGTCCTACGGACGACCCCCTGCGCAGGTGGAAATTGTAATGCAGGCAGTCATGATTCTTCGAGGCAATGAGCCCACGTGGGCAGAAGCAAAGCGACAGTTAG
Seq A exon
TTGTACGGGCGTCTGTATCGAGTGGTAGAGCCTAAGCGGATCCGAATGAACGCCGCCATGGCCCAGCTTCAGGAGAAGCAAGCAGCCCTAGCTGAAGCCCAGGAAAAGCTGCGAGAG
Seq C2 exon
GTGGTCGGATGCTGATTCGAATTGGTGACAAGGAGGTGGAATACAATCCCAATTTCCGTTTCTACCTCACCACCAAGCTCTCCAATCCCCACTATAATCCAGAGACTTCGGCTAAGACCACCATTGTCAACTTCGCTGTAAAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237_MULTIEX2-2/23=C1-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF127772=MT=FE(13.9=100)
A:
PF127772=MT=FE(11.3=100)
C2:
PF127812=AAA_9=FE(21.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGAGATCAAGTCCTACGGA
R:
AGCGAAGTTGACAATGGTGGT
Band lengths:
250-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types