RnoEX0028515 @ rn6
Exon Skipping
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56045738-56055337:-
Coord C1 exon
chr10:56055168-56055337
Coord A exon
chr10:56054610-56054726
Coord C2 exon
chr10:56045738-56045902
Length
117 bp
Sequences
Splice sites
3' ss Seq
GCCTGCCTGTCCGCCCACAGTTG
3' ss Score
10.17
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GGGAGCAGAACTTCATCAAGTCACTGATCTACTTTGATAAAGACAACATCTCAGATAAGGTGCTGAAAAAGATTGGGGCCTACTGTGCCCAGCCCGACTTCCAGCCTGATATCATTGGCAGAGTCTCCCTGGCAGCTAAGTCCCTCTGCATGTGGGTGCGGGCCATGGAG
Seq A exon
TTGTATGGGCGTCTGTATCGAGTTGTGGAGCCCAAGCGGATCCGAATGAATGCTGCCATCGCTCAGCTTCAGGAGAAGCAAGCAGCCCTAGCTGAGGCCCAGGAAAAGCTGCGGGAG
Seq C2 exon
GTAGCAGAGAAACTGGAGATGCTGAAGAAACAGTACGATGAGAAGCTGGCACAGAAGGAGGAGCTTCGCAAGAAATCGGAAGAGATGGAGCTGAAGCTGGAACGGGCAGGAATGTTGGTGTCTGGGCTAGCTGGGGAAAAGGCCCGATGGGAAGAGACCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688-'81-84,'81-82,82-84
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(16.6=100)
A:
PF127772=MT=FE(11.3=100)
C2:
PF127772=MT=FE(16.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAAAAAGATTGGGGCCT
R:
AGCTAGCCCAGACACCAACAT
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]