BtaEX6086794 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008605 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr19:28102332-28104122:+
Coord C1 exon
chr19:28102332-28102471
Coord A exon
chr19:28103740-28103872
Coord C2 exon
chr19:28103983-28104122
Length
133 bp
Sequences
Splice sites
3' ss Seq
CCTCTCACAACCCCTGCCAGGAA
3' ss Score
4.86
5' ss Seq
AATGTGAGG
5' ss Score
4.51
Exon sequences
Seq C1 exon
ATCCAGACGCTCATCATAGACCAGGCGCGCGCTGAGCAGGTGCCGGAGTCCTCGGACAGCCTCTTCACCTACCTCATCGAGCGCGTGCGGAACAACCTGCACATCGTCCTCTGCCTCAGCCCCGTGGGCGACCCCTTCAG
Seq A exon
GAACTGGATCCGCCAATACCCAGCCTTGGTGAACTGCACAACCATTAACTGGTTCTCAGAGTGGCCACGCGAGGCCCTGCTGGAGGTGGCTGAGAAGTACCTGATGGGAGCCGATCTGGGGACCCAGGAAAAT
Seq C2 exon
ATCCACAAGAAAGTGGCCCAGATCTTCGTCACCATGCACTGGTCAGTGGCCACATATTCCCAGAAGATGCTGTTGGAACTCCGAAGACACAACTATGTCACGCCCACTAACTACCTGGAACTTGTGTCTGGATATAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008605-'58-58,'58-57,59-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(17.0=100)
A:
PF127802=AAA_8=FE(16.2=100)
C2:
PF127802=AAA_8=FE(17.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCTCATCATAGACCAGGC
R:
GTGGGCGTGACATAGTTGTGT
Band lengths:
242-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]