MmuEX0014988 @ mm9
Exon Skipping
Gene
ENSMUSG00000005237 | Dnahc2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69264501-69266048:-
Coord C1 exon
chr11:69265909-69266048
Coord A exon
chr11:69264724-69264856
Coord C2 exon
chr11:69264501-69264640
Length
133 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTGACTTCCTCCTAGGAA
3' ss Score
8.19
5' ss Seq
AATGTGAGC
5' ss Score
5.2
Exon sequences
Seq C1 exon
ATCCAGAACCATATCATAGACCAGGCCCGGGCAGAACAGATACCAGAATCCTCGGACAGCCTCTTTGCATACCTCATCGAGCGCGTGCGGAACAACCTGCACATTGTGCTCTGTCTAAGTCCCGTGGGAGACCCCTTCAG
Seq A exon
GAATTGGATTCGCCAGTACCCAGCCTTAGTAAACTGTACAACCATCAACTGGTTCTCAGAGTGGCCCCGAGAGGCCTTGCTAGAGGTGGCTGAGAAGTACATTATAGGAGTGGACTTGGGGACACAGGAGAAT
Seq C2 exon
ATCCACAGGAAAGTGGCCCAAATCTTTGTCACCATGCACTGGTCAGTGGCTCAGTATTCCCAGAAGATGCTGTTGGAACTGCGGAGATACAACTATGTCACACCCACAAACTACCTGGAGCTCGTGTCTGGATATAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-'68-63,'68-62,69-63
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(17.0=100)
A:
PF127802=AAA_8=PD(13.7=82.2)
C2:
PF127802=AAA_8=FE(17.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCATAGACCAGGCCCGGG
R:
AGCTCCAGGTAGTTTGTGGGT
Band lengths:
252-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: