DreEX6004716 @ danRer10
Exon Skipping
Gene
ENSDARG00000087352 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr7:21282916-21294479:+
Coord C1 exon
chr7:21282916-21283055
Coord A exon
chr7:21290948-21291080
Coord C2 exon
chr7:21294340-21294479
Length
133 bp
Sequences
Splice sites
3' ss Seq
ATTTGTGTGTGTTTGTTTAGGAA
3' ss Score
9.56
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
ATCCAGAGCGCTCTGTCAGACTCCGCCAGGAAGGACAATATCCTGGAGACACCAGACGCCATGTTTAACTACCTGATAGAGCGCGTCAGGAACAACCTGCACATTGTGTTGTGCATGAGCCCTGTAGGAGATCCTTTCAG
Seq A exon
GAATCGTATTCGTCAGTACCCAGCACTGGTCAACTGCACAACAATAGACTGGTTTTCTGAATGGCCACGCGACGCTTTGTTGGAAGTGGCAGAAAGATGTTTGGATGGACTGTCTCTTGGGAGCGATGATGGG
Seq C2 exon
ATCCAGACTAAAGTTGCCAGTATCTTCGTCACCGTGCACCAGTCTGTGGCCCAGTTCTCTCACAGGATGAAAGTAGAGCTGAAGAGACACAATTACGTCACACCAACCAACTACCTGGAGCTCGTTTCTGGATACAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087352-'59-63,'59-62,60-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(17.2=100)
A:
PF127802=AAA_8=FE(16.4=100)
C2:
PF127802=AAA_8=FE(17.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCAGGAAGGACAATATCC
R:
ACGAGCTCCAGGTAGTTGGTT
Band lengths:
243-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]