RnoEX0028513 @ rn6
Exon Skipping
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56060269-56062030:-
Coord C1 exon
chr10:56061891-56062030
Coord A exon
chr10:56060493-56060625
Coord C2 exon
chr10:56060269-56060408
Length
133 bp
Sequences
Splice sites
3' ss Seq
TGCCCTCGACTTCTCCCTAGGAA
3' ss Score
9.3
5' ss Seq
AATGTGAGC
5' ss Score
5.2
Exon sequences
Seq C1 exon
ATCCAGAACCAAATCATAGACCAGGCCCGGGCAGAACAGATATCAGAGTCCTCGGACAGCCTCTTTGCATACCTCATCGAGCGCGTGCGGAACAACCTGCACATTGTGCTCTGCCTAAGTCCCGTGGGGGACCCCTTCAG
Seq A exon
GAATTGGATCCGCCAGTACCCAGCCTTAGTAAACTGTACAACCATCAACTGGTTCTCAGAGTGGCCCCGAGAGGCCTTGCTAGAGGTGGCTGAGAAGTACCTTGTCGGAGTGGACTTGGGGACACAGGAGAAT
Seq C2 exon
ATCCACAGGAAAGTGGCCCAGATCTTTGTCACCATGCACTGGTCGGTGGCCCAGTATTCCCAGAAGATGCTACTGGAGCTGCGGAGACACAACTACGTCACACCCACAAACTACCTGGAGCTCGTGTCTGGATACAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688-'75-74,'75-73,76-74
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(17.0=100)
A:
PF127802=AAA_8=FE(16.2=100)
C2:
PF127802=AAA_8=FE(17.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATCATAGACCAGGCCCGG
R:
AGCTCCAGGTAGTTTGTGGGT
Band lengths:
253-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]