BtaEX6086797 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008605 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr19:28101080-28102082:+
Coord C1 exon
chr19:28101080-28101229
Coord A exon
chr19:28101574-28101741
Coord C2 exon
chr19:28101922-28102082
Length
168 bp
Sequences
Splice sites
3' ss Seq
TCCTCCCACTTTCCCTCCAGTCA
3' ss Score
9.39
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GGGACTTCCTGCGGGAGCCCAAGGTGTACGAGGACCTGACGGATCTGACGGTCCTGAAGACAGCCATGGAGACGGCACTCAACGAGTACAACCTGTCACCCGCTGTCGTGCCAATGCAGCTGGTGCTCTTCCGAGAGGCCATCGAACACA
Seq A exon
TCACACGGATCGTGCGGGTCATTGGACAGCCTCGGGGCAACATGCTTTTGGTGGGCATTGGGGGCAGCGGGCGGCAGAGTCTGGCCCGCCTGGCCTCATCCATCTGCGAGTACATCACCTTCCAGATTGAGGTCACCAAACATTATCGGAGGCAGGAATTCCGAGAAG
Seq C2 exon
ATATCAAGCGTCTGTATCGCCAGGCTGGGGTGGAGCTCAACGCCACGTCCTTCCTTTTCGTGGACACCCAGATTGCTGACGAATCATTCCTAGAGGACATCAACAACATCCTTAGCTCGGGCGAGGTCCCCAATCTCTATAAGGCGGATGAATTCGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008605-'55-55,'55-54,56-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(7.7=41.2)
A:
PF127802=AAA_8=FE(20.7=100)
C2:
PF127802=AAA_8=FE(19.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACGAGGACCTGACGGATC
R:
GCCCGAGCTAAGGATGTTGTT
Band lengths:
248-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]