DreEX6004718 @ danRer10
Exon Skipping
Gene
ENSDARG00000087352 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr7:21277260-21282808:+
Coord C1 exon
chr7:21277260-21277409
Coord A exon
chr7:21279634-21279801
Coord C2 exon
chr7:21282648-21282808
Length
168 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTTCTGCCCCCGCAGTCA
3' ss Score
11.13
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GTGATTTCCTGAGGGAGTCACAAATATATGAGGACCTGCTGGACTTTAAAGCTCTGAAGGTTCATATGGAGAACCAGCTGGAGGACTACAACCTCACGCCTGGTGTAGTGCCCATGAGCCTGGTGCTCTTTAGAGATGCTATAGATCATG
Seq A exon
TCACACGTTTGGTGCGAGTGATCAGTCAGCTCAGAGGGAACATGTTGCTGGTTGGCATCGGTGGCTCAGGGAGGCAGAGTTTAACCAGACTGGCTGCTTACATCTGTAGGTTTACGGTTTTCCAGGTGGAGGTCACCAAACAGTACCGCAAACAGGAGTTCAGAGAGG
Seq C2 exon
ATATTAAAAAGCTCTATCGGCTGACAGGAGTGGAAAACAAGCCCACTGTGTTCCTGTTTAATGACACACAGATCGTGGACGAGTCCTTCCTTGAAGACATTAACAACATCTTGAGCTCTGGGGAGGTGCCCAATCTCTATAAAGCAGACGAGCTCGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087352-'56-60,'56-59,57-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(6.7=35.3)
A:
PF127802=AAA_8=FE(20.9=100)
C2:
PF127802=AAA_8=FE(19.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACCAGCTGGAGGACTA
R:
CTCATCGAGCTCGTCTGCTTT
Band lengths:
244-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]