RnoEX6048034 @ rn6
Exon Skipping
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56062292-56063434:-
Coord C1 exon
chr10:56063285-56063434
Coord A exon
chr10:56062653-56062820
Coord C2 exon
chr10:56062292-56062452
Length
168 bp
Sequences
Splice sites
3' ss Seq
TACCCTCACCCGCTCCCCAGTCA
3' ss Score
7.52
5' ss Seq
ACGGTATGG
5' ss Score
8.47
Exon sequences
Seq C1 exon
GGGACTTCCTGAAGGAGCCCAAGGTCTATGAAGACTTGGTAGATCTGTCAGTATTGAAGACAGCCATGGAGACAGCACTGAATGAGTATAATCTGTCTCCTTCTGTCGTGCAAATGCAGCTGGTGCTCTTCCGAGAGGCCATTGAACACA
Seq A exon
TCACTCGGATCGTGCGTGTGATCGGACAGCCCCGAGGCAACATGCTGCTGGTGGGGATTGGAGGCAGTGGAAGGCAGAGTCTGGCCCGCTTAGCCTCTAGCATCTGCGAGTACAACACATTCCAGATCGAGGTCACCAAGCACTACCGCAAACAGGAGTTCCGAGACG
Seq C2 exon
ATATCAAGCGCCTGTATCGCCAGGCAGGGGTAGAACTCCAGGCCACGTCTTTCCTTTTTGTGGACACCCAAATAGCCGACGAATCCTTCCTAGAGGACATCAACAACATCCTCAGCTCAGGCGAAGTCCCCAACCTCTACAAGGCTGACGAGTTTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688-'72-71,'72-70,73-71=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(7.7=41.2)
A:
PF127802=AAA_8=FE(20.7=100)
C2:
PF127802=AAA_8=FE(19.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCCTGAAGGAGCCCAAG
R:
TCTAGGAAGGATTCGTCGGCT
Band lengths:
242-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]