MmuEX6086677 @ mm10
Exon Skipping
Gene
ENSMUSG00000005237 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69452818-69453925:-
Coord C1 exon
chr11:69453776-69453925
Coord A exon
chr11:69453161-69453328
Coord C2 exon
chr11:69452818-69452978
Length
168 bp
Sequences
Splice sites
3' ss Seq
ACCCTCACCCCGCTCCCCAGTCA
3' ss Score
5.59
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
Exon sequences
Seq C1 exon
GGGACTTCCTGAAGGAGCCCAAGGTCTATGAAGACCTGGTAGACCTGACAGTATTGAAGACAGCCATGGAGACGGCCCTGAATGAGTACAATCTGTCTCCTTCGGTTGTGCCAATGCAGCTGGTGCTCTTCCGAGAGGCCATTGAACACA
Seq A exon
TCACTCGGATCGTGCGTGTGATCGGACAGCCCCGAGGCAACATGTTGCTGGTGGGGATCGGGGGCAGCGGGAGGCAGAGTCTGGCCCGCTTGGCGTCTTCCATCTGCGATTATAACACGTTCCAGATCGAGGTCACCAAGCACTACCGCAAACAGGAGTTCCGAGACG
Seq C2 exon
ATATCAAGCGCTTGTATCGACAGGCAGGGGTAGAACTCCAGACCACGTCTTTCCTTTTCGTGGACACCCAGATAGCTGACGAATCCTTCCTGGAAGACATCAACAACATCCTTAGCTCGGGCGAAGTCCCCAATCTCTACAAGTCTGACGAATTTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-'79-76,'79-74,80-76=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(7.7=41.2)
A:
PF127802=AAA_8=FE(20.7=100)
C2:
PF127802=AAA_8=FE(19.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCCTGAAGGAGCCCAAG
R:
TCCAGGAAGGATTCGTCAGCT
Band lengths:
242-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types