BtaEX6086831 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008605 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr19:28066787-28068142:+
Coord C1 exon
chr19:28066787-28066975
Coord A exon
chr19:28067171-28067318
Coord C2 exon
chr19:28067950-28068142
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTGGTGCTCCCACAGGTG
3' ss Score
10.49
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATTCAGCAGCAGTGGATGCTGTACACGATTCGGCTGGACCGCATGATGGAGGATGCCTTGAGGCTGAACGTGAAGTGGTCTCTGTTGGAACTGTCCAAGGCCATCAATGGGGATGGCAAGACTACCCCCAACCCACTCTTCCGAGTGCTTGTCATTTTGAAGAATGATCTTCAGGGAGGTGTGGCCCAG
Seq A exon
GTGGAGTTCTCACCCACTCTGCAGACCTTGGCAAGTGTGGTCAATGACATCGGCAGCCACCTCTTCTCCACCATCTCCGTCTTCCGCCACCTCCCCGAAATTCTCATCAAGCGCAAGTTTCAGCGTGAGCCCATCCACACCATCGTGG
Seq C2 exon
AGCGGGATGAGGACATCAAGAAGATCCAGGCCCAGATCAGCAGTGGCATGACCAACAATGCAAGCCTGCTGCAGAACTACCTCAAGACCTGGGACATGTACCGCGAGATCTGGGAGATCAACAAGGACTCCTTCATCCGCCGATACCAGCGCCTCAACCCGCCTGTCTCTTCCTTTGATGCTGACATTGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008605-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGGCTGAACGTGAAGTGG
R:
ATCTCCCAGATCTCGCGGTAC
Band lengths:
250-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]