RnoEX6048006 @ rn6
Exon Skipping
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56101052-56103296:-
Coord C1 exon
chr10:56103108-56103296
Coord A exon
chr10:56102074-56102221
Coord C2 exon
chr10:56101052-56101244
Length
148 bp
Sequences
Splice sites
3' ss Seq
CCCCCCCACCCCGCCCACAGGTG
3' ss Score
11.74
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATTCAGCAGCAGTGGTTGCTCTACACCATACGGCTGGATCACATGATGGAGGACGCCCTGCGTCTGAACGTGAAGTGGTCACTGCTGGAACTCTCCAAGGCCATCAACGGGGACGGGAAGACCTCTCCAAACCCACTCTTCAGGGTCCTTGTCATTTTACAGAGCGATGTGCAGGGTGGTGGGGCACAG
Seq A exon
GTGGAATTCTCCCCAACACTGCAGACTCTGGCGAGTGTGGTCAATGACATAGGCAGTCACCTCTTCTCTACCATCTCTGTGTTCCGTCACCTCCCCGATATCCTCACCAAACGCAAGATGACTCGAGAACCTATTCATGTGGTCGTGG
Seq C2 exon
AGCGAGACGAGGACATCAGGAAGATCCAGGCCCAGATCAGCAGTGGGATGACGAACAACGCAAGTCTGCTGCAGAATTACCTCAAGACCTGGGACATGTATCGGGAGATCTGGGAGATCAACAAGGACTCCTTCATCCGAAGATACCAGCGCCTCAACCCCCCTGTCTCCTCTTTCGATGCTGACATTGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688-'27-26,'27-24,28-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCACATGATGGAGGACGCC
R:
CCCGATACATGTCCCAGGTCT
Band lengths:
258-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]