HsaEX6020689 @ hg38
Exon Skipping
Gene
ENSG00000183914 | DNAH2
Description
dynein axonemal heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr17:7759422-7760932:+
Coord C1 exon
chr17:7759422-7759610
Coord A exon
chr17:7759791-7759938
Coord C2 exon
chr17:7760740-7760932
Length
148 bp
Sequences
Splice sites
3' ss Seq
CTCCACTGGGTTCCTCACAGGTG
3' ss Score
7.82
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATTCAGCAGCAGTGGATGCTGTACATGATTCGGCTGGACCGCATGATGGAGGATGCCCTGCGCCTGAATGTGAAGTGGTCACTGCTAGAACTATCCAAGGCTATCAACGGGGATGGAAAGACCAGCCCAAACCCACTCTTCCAAGTCCTTGTCATTTTGAAGAATGATCTGCAAGGAAGTGTGGCACAG
Seq A exon
GTGGAATTCTCACCCACTCTGCAGACTTTGGCAGGTGTGGTCAATGACATTGGCAACCACCTCTTTTCCACCATCTCTGTCTTCTGCCACCTCCCTGACATTCTCACCAAGCGCAAGTTACATCGTGAACCCATCCAAACAGTTGTGG
Seq C2 exon
AGCAAGATGAGGACATCAAGAAGATCCAGACCCAAATCAGCAGCGGCATGACTAACAACGCAAGCCTGCTGCAGAACTACCTCAAGACCTGGGACATGTACCGGGAGATCTGGGAGATCAACAAGGACTCCTTCATTCATCGCTACCAGCGCCTCAACCCTCCTGTCTCTTCTTTTGTTGCCGACATTGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183914-'28-32,'28-30,29-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTGAATGTGAAGTGGTCA
R:
CCCAGATCTCCCGGTACATGT
Band lengths:
243-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains