HsaEX6020689 @ hg19
Exon Skipping
Gene
ENSG00000183914 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:2948]
Coordinates
chr17:7662740-7664250:+
Coord C1 exon
chr17:7662740-7662928
Coord A exon
chr17:7663109-7663256
Coord C2 exon
chr17:7664058-7664250
Length
148 bp
Sequences
Splice sites
3' ss Seq
CTCCACTGGGTTCCTCACAGGTG
3' ss Score
7.82
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATTCAGCAGCAGTGGATGCTGTACATGATTCGGCTGGACCGCATGATGGAGGATGCCCTGCGCCTGAATGTGAAGTGGTCACTGCTAGAACTATCCAAGGCTATCAACGGGGATGGAAAGACCAGCCCAAACCCACTCTTCCAAGTCCTTGTCATTTTGAAGAATGATCTGCAAGGAAGTGTGGCACAG
Seq A exon
GTGGAATTCTCACCCACTCTGCAGACTTTGGCAGGTGTGGTCAATGACATTGGCAACCACCTCTTTTCCACCATCTCTGTCTTCTGCCACCTCCCTGACATTCTCACCAAGCGCAAGTTACATCGTGAACCCATCCAAACAGTTGTGG
Seq C2 exon
AGCAAGATGAGGACATCAAGAAGATCCAGACCCAAATCAGCAGCGGCATGACTAACAACGCAAGCCTGCTGCAGAACTACCTCAAGACCTGGGACATGTACCGGGAGATCTGGGAGATCAACAAGGACTCCTTCATTCATCGCTACCAGCGCCTCAACCCTCCTGTCTCTTCTTTTGTTGCCGACATTGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183914-'17-17,'17-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTGAATGTGAAGTGGTCA
R:
CCCAGATCTCCCGGTACATGT
Band lengths:
243-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)