BtaEX6086839 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008605 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr19:28046184-28051475:+
Coord C1 exon
chr19:28046184-28046375
Coord A exon
chr19:28050712-28050917
Coord C2 exon
chr19:28051346-28051475
Length
206 bp
Sequences
Splice sites
3' ss Seq
TCACGCTGACTTCTTTGCAGGTA
3' ss Score
8.66
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
GATGGCTCTCGTCAAGCACAGTCAAACCTGACTTTCTTGTCGATCCTGAAGGAGCCTTACCAGGAACTGGCATTCATGAGGCCAAAGGACATCTCTAGTAAACTCCCGAGGCTGATCAGCCTCATCCGTATCATCTGGGTCAACTCTCCCCACTACAATACTCGGGAGAGACTGACCTCCCTCTTCCGGAAG
Seq A exon
GTATGTGACTGTCAGTACCATTTTGCCCGCTGGGAAGATGGAAAGCAAGGTCCCCTCCCCTGCTTCTTCGGTGCCCAGGGGCCCCAGATAACACGGAACTTGCTGGAGATTGAGGACATCTTTCACAAAAACCTGCACGTGCTGCGAGCCGTCCGCGGGGGCATCCTGGATGTCAAGAACACCTCTTGGCATGAAGACTACAATAG
Seq C2 exon
GTTCCGGGCTGGAGTCAAGGACCTGGAGGTGATGACTCAGAACTTGATCACCTCGGCCTTCGAGTTAGTCCGTGACGTGGAGCATGGGGTGCTGCTGCTGGATACCTTCCATCGGCTCTCGGCCCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008605-'6-9,'6-8,8-9=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.076 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(40.1=100)
A:
PF083857=DHC_N1=PD(1.9=4.3),PF083857=DHC_N1=PU(18.8=89.9)
C2:
PF083857=DHC_N1=FE(13.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCGTCAAGCACAGTCAA
R:
GAAGGTATCCAGCAGCAGCAC
Band lengths:
297-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]