RnoEX0028528 @ rn6
Exon Skipping
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56120241-56121372:-
Coord C1 exon
chr10:56121285-56121372
Coord A exon
chr10:56120754-56120959
Coord C2 exon
chr10:56120241-56120370
Length
206 bp
Sequences
Splice sites
3' ss Seq
TCGCCCTGACCTCTTTTCAGGTA
3' ss Score
8.97
5' ss Seq
TAAGTGAGG
5' ss Score
2.61
Exon sequences
Seq C1 exon
GTTCTCCAACCGGGGCTGGGTTCTAGACCAGACGAGCATATTTGCTCAAGTAGACGCCTTTGTGCAGCGCTGCAAAGATCTTATTGAG
Seq A exon
GTATGCGACTGCCAGTACCACTTTGCCCGTTGGTTAGACGGCACACAGGGTCCCCTTCCATGCTTCTTCGGTGCCCAGGGGCCACAGATCACACGGAACTTGCTAGAAATTGAGGACATCTTTCATAAAAATCTGCAAACGCTGCGAGCTGTGCGTGGGGGCATCCTAGATGTTAAGAACACCTCTTGGCACGAGGACTACAATAA
Seq C2 exon
ATTCCGTGCTGGTATCAAAGACCTGGAGGTGATGACCCAGAATCTGATCACATCAGCCTTTGAGTTGGTCCGGGATGTGGAGCACGGAGTGCTGCTCTTGGACACTTTCCACAGGCTGGCCAATCGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688_CASSETTE7
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(5.1=100)
A:
PF083857=DHC_N1=FE(11.9=100)
C2:
PF083857=DHC_N1=FE(7.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCGGGGCTGGGTTCTAG
R:
CTCCCGATTGGCCAGCCT
Band lengths:
212-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]