MmuEX6086636 @ mm9
Exon Skipping
Gene
ENSMUSG00000005237 | Dnahc2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69329484-69331969:-
Coord C1 exon
chr11:69331778-69331969
Coord A exon
chr11:69329977-69330182
Coord C2 exon
chr11:69329484-69329613
Length
206 bp
Sequences
Splice sites
3' ss Seq
TCACCCTGACCTCTTTTTAGGTA
3' ss Score
9.77
5' ss Seq
CAAGTGAGG
5' ss Score
5.85
Exon sequences
Seq C1 exon
GATGGCTCTCGACAAGCTCAGTCCAACCTGACTTTCTTGTCCATCCTGAGGGAACCCTACCAGGAGTTGGCCTTCATGAAGCCTAAGGACATCTCTGAGAAGCTCCCGAAGCTGATCAGCCTCATCCGAATCATCTGGGTCAACTCCCCCCACTACAACACTCGGGAAAGGCTGACGGCGCTGTTCCGGAAG
Seq A exon
GTATGCGAATGTCAGTACCACTTTGCCCGTTGGGAAGACGGCAAGCAAGGTCCCCTTCCATGCTTCTTCGGTGCCCAGGGGCCACAGATCACACGAAACTTGCTAGAAATCGAGGACATCTTTCATAAAAATCTGCAAACGCTGCGAGCCGTGCGTGGCGGCATCCTGGATGTTAAGAACACCTCTTGGCACGAAGACTACAACAA
Seq C2 exon
ATTCCGTGGTGGTATCAAGGACCTGGAGGTGATGACCCAGAATCTGATTACCTCGGCCTTTGAGTTGGTCCGGGACGTAGAGCACGGAGTGCTGCTCTTGGACACTTTCCACAGGCTGGCCACTCGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-'9-12,'9-11,12-12=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(7.6=18.5),PF083857=DHC_N1=PU(14.8=75.4)
A:
PF083857=DHC_N1=PD(1.9=4.3),PF083857=DHC_N1=PU(18.8=89.9)
C2:
PF083857=DHC_N1=FE(13.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGACAAGCTCAGTCCAACC
R:
GGAAAGTGTCCAAGAGCAGCA
Band lengths:
295-501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: